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Evan A. Thomas, PhD; Christopher A. Reid, PhD; Samuel F. Berkovic, MD, FRS; Steven Petrou, PhD

Arch Neurol. 2009;66(10):1225-1232.

Objective  To use computer simulation to perform a "genetic sensitivity" analysis to predict which genes are best positioned to increase risk as well as to predict functionally how variants in these genes might increase network excitability.

Methods  A previously published, biophysically realistic model of the dentate gyrus that included mossy fiber sprouting between granule cells was used to model putative environmental changes associated with temporal lobe epilepsy. Properties of voltage-gated ion channels, either 1 at a time or in combinations, were varied systematically to determine their effect on network excitability.

Results  We found that the network is most sensitive to changes in steady-state voltage dependence of activation and relatively insensitive to changes in inactivation. Changes in sodium channels had the greatest effect on excitability, followed by changes in fast-delayed rectifier potassium channels and then N-type calcium channels. We also investigated the effects of simultaneous small changes in several ion channels, modeling a complex genetic background expected for common epilepsies. A combination of 2 or 3 simultaneous voltage shifts in steady-state activation as small as 2 mV could produce large changes in network excitability.

Conclusion  Statistical power calculations indicate that changes this small are effectively undetectable with current experimental practices, thus posing new challenges for the functional analysis and validation of epilepsy genes.

Author Affiliations: Howard Florey Institute, Parkville (Drs Thomas, Reid, and Petrou); Department of Physiology, University of Melbourne (Dr Thomas); Department of Medicine, University of Melbourne, Austin Health, Heidelberg (Dr Reid); Center for Neuroscience, University of Melbourne, Parkville, Victoria, Australia (Dr Petrou).

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